Aliases : TIR1
Description : substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) & original description: none
Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aob_g11099 | |
| Cluster | HCCA: Cluster_156 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G26810 | AFB2 | auxin signaling F-box 2 | 0.03 | OrthoFinder output from all 47 species | |
| AT4G03190 | AFB1, ATGRH1, GRH1 | GRR1-like protein 1 | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene01669.t1 | AFB2, Aspi01Gene01669 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene04141.t1 | AFB2, Aspi01Gene04141 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene06540.t1 | AFB2, Aspi01Gene06540 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene11804.t1 | AFB2, Aspi01Gene11804 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g01293 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.1Z143900.1 | COI1, Ceric.1Z143900 | not classified & original description: pacid=50567868... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.1Z144000.1 | COI1, Ceric.1Z144000 | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g07930 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01003183001 | TIR1 | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01009126001 | AFB5 | Protein degradation.peptide tagging.Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g08850.1 | AFB5, LOC_Os03g08850 | component TIR1/AFB of auxin receptor complex. component... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g15880.4 | COI1, LOC_Os03g15880 | component COI of jasmonic acid receptor complex | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06163 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g18913 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10189662g0010 | AFB2 | Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_47869g0020 | No alias | F-box protein FBX14 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_78902g0010 | AFB5 | component TIR1/AFB of auxin receptor complex | 0.04 | OrthoFinder output from all 47 species | |
| MA_92309g0010 | TIR1 | component TIR1/AFB of auxin receptor complex. component... | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g26590.1 | COI1 | component COI of jasmonic acid receptor complex | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g02465 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g01449 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g16353 | COI1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g02288 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g03902 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0032.g010765 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g28215 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g49637 | No alias | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g074980.3.1 | AFB5, Solyc04g074980 | component TIR1/AFB of auxin receptor complex. component... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g20191 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0006486 | protein glycosylation | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015297 | antiporter activity | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0042910 | xenobiotic transmembrane transporter activity | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043413 | macromolecule glycosylation | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0070085 | glycosylation | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |
