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  5. Aob_g11371

Aob_g11371


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g11371

Target Alias Description ECC score Gene Family Method Actions
AT3G02840 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003285 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16119 PUB25 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05204 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12714 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23185 CMPG1, ATCMPG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32770 PUB15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57047 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g60936 PUB25 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17992.t1 PUB25, Aspi01Gene17992 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18452.t1 PUB25, Aspi01Gene18452 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18453.t1 PUB25, Aspi01Gene18453 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01209 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04516 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03660 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11880 CMPG1, ATCMPG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16036 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16356 PUB22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011140001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01031720001 PUB26 U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01037585001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_17119 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g49970.1 PUB23, LOC_Os04g49970 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g11599 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g47390 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10378 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29544 PUB23 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33878 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36530 PUB23 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37565 PUB26 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42463 PUB23 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g42738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g007010.2.1 PUB22, Solyc01g007010 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e007109_P001 PUB23, Zm00001e007109 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e014752_P001 PUB23, Zm00001e014752 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 9 77
No external refs found!