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  5. Aob_g11608

Aob_g11608 (ESP3, EMB2733)


Aliases : ESP3, EMB2733

Description : RNA helicase *(Prp2) & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g11608
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Ala_g07016 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g73283 MEE29 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001628.10 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Ehy_g14594 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g32370.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Len_g13066 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Nbi_g10611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3s62_110V3.1 Pp3s62_110 RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Ppi_g17516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29503 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Smo76120 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004664 prephenate dehydratase activity IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 920 996
IPR007502 Helicase-assoc_dom 772 846
IPR001650 Helicase_C 583 709
No external refs found!