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  5. Aob_g11786

Aob_g11786


Description : snoRNP rRNA methylation complex assembly factor *(NUFIP) & original description: none


Gene families : OG0003682 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003682_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g11786

Target Alias Description ECC score Gene Family Method Actions
AT5G18440 No alias CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental... 0.05 OrthoFinder output from all 47 species
Adi_g082531 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.04 OrthoFinder output from all 47 species
Adi_g086858 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Als_g30603 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.02 OrthoFinder output from all 47 species
Als_g63113 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Aop_g08132 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Cba_g38684 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Ceric.30G030300.1 Ceric.30G030300 not classified & original description: pacid=50608069... 0.03 OrthoFinder output from all 47 species
Dac_g20421 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Dcu_g50146 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.06 OrthoFinder output from all 47 species
Ehy_g24829 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.05 OrthoFinder output from all 47 species
Gb_31525 No alias NUFIP snoRNP rRNA methylation complex assembly factor 0.05 OrthoFinder output from all 47 species
Lfl_g27692 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.02 OrthoFinder output from all 47 species
MA_10431482g0010 No alias NUFIP snoRNP rRNA methylation complex assembly factor 0.02 OrthoFinder output from all 47 species
Nbi_g29932 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Pir_g07400 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.02 OrthoFinder output from all 47 species
Pnu_g23882 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Pp3c27_4140V3.1 Pp3c27_4140 No annotation 0.01 OrthoFinder output from all 47 species
Solyc01g096920.3.1 Solyc01g096920 NUFIP snoRNP rRNA methylation complex assembly factor 0.04 OrthoFinder output from all 47 species
Spa_g15180 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.05 OrthoFinder output from all 47 species
Tin_g13889 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.03 OrthoFinder output from all 47 species
Tin_g18803 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR019496 NUFIP1_cons_dom 665 703
No external refs found!