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  5. Aob_g12583

Aob_g12583


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g12583

Target Alias Description ECC score Gene Family Method Actions
Adi_g024582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12767 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18562 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75118 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G058600.1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01008922001 No alias Pentatricopeptide repeat-containing protein At4g08210... 0.03 OrthoFinder output from all 47 species
GSVIVT01012461001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Lfl_g15292 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_9384g0020 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.03 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40943 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44143 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13532 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009016 No alias not classified & original description: CDS=1-2955 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011528 EMB2758 non-specific cation channel *(PQL1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026116 No alias not classified & original description: CDS=1-2901 0.02 OrthoFinder output from all 47 species
Sam_g12347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 403 428
IPR002885 Pentatricopeptide_repeat 637 662
IPR002885 Pentatricopeptide_repeat 229 259
IPR002885 Pentatricopeptide_repeat 201 226
IPR002885 Pentatricopeptide_repeat 469 494
IPR002885 Pentatricopeptide_repeat 569 593
IPR002885 Pentatricopeptide_repeat 126 172
IPR002885 Pentatricopeptide_repeat 495 542
IPR002885 Pentatricopeptide_repeat 327 375
No external refs found!