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  5. Lfl_g22288

Lfl_g22288 (RAN3, ATRAN3)


Aliases : RAN3, ATRAN3

Description : GTPase *(Ran) & original description: none


Gene families : OG0000916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000916_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g22288
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AT5G20010 RAN1, RAN-1, ATRAN1 RAS-related nuclear protein-1 0.02 OrthoFinder output from all 47 species
AT5G20020 RAN2 RAS-related GTP-binding nuclear protein 2 0.02 OrthoFinder output from all 47 species
Adi_g002593 RAN1, RAN-1, ATRAN1 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054055 RAN1, RAN-1, ATRAN1 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054056 RAN2 GTPase *(Ran) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g104949 RAN2 GTPase *(Ran) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13766.t1 RAN2, Aspi01Gene13766 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0147.g053043 RAN2 GTPase *(Ran) & original description: CDS=1-873 0.03 OrthoFinder output from all 47 species
Azfi_s0548.g076431 RAN2 GTPase *(Ran) & original description: CDS=1-873 0.03 OrthoFinder output from all 47 species
Cba_g15320 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31120 RAN1, RAN-1, ATRAN1 GTPase *(Ran) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G019400.1 RAN3, ATRAN3,... GTPase *(Ran) & original description: pacid=50612012... 0.06 OrthoFinder output from all 47 species
Ceric.35G063800.1 RAN3, ATRAN3,... GTPase *(Ran) & original description: pacid=50581751... 0.05 OrthoFinder output from all 47 species
Cre03.g191050 RAN1, RAN-1, ATRAN1 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Dac_g44710 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08971 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015482001 RAN2 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
GSVIVT01035804001 RAN2 Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Gb_30495 RAN3, ATRAN3 Ran GTPase 0.05 OrthoFinder output from all 47 species
Mp2g19920.1 RAN2 Ran GTPase 0.03 OrthoFinder output from all 47 species
Pir_g01865 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11147 RAN2 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27776 RAN1, RAN-1, ATRAN1 GTPase *(Ran) & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c20_18280V3.1 RAN2, Pp3c20_18280 RAN GTPase 3 0.01 OrthoFinder output from all 47 species
Sam_g19307 No alias GTPase *(Ran) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g104680.4.1 RAN2, Solyc01g104680 Ran GTPase 0.02 OrthoFinder output from all 47 species
Solyc01g104700.4.1 RAN2, Solyc01g104700 Ran GTPase 0.03 OrthoFinder output from all 47 species
Solyc05g023800.3.1 RAN2, Solyc05g023800 Ran GTPase 0.02 OrthoFinder output from all 47 species
Spa_g05240 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g07556 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24079 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40901 RAN2 GTPase *(Ran) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 3 151
No external refs found!