Aob_g12795 (CHR11)

Aliases : CHR11

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g12795

Target	Alias	Description	ECC score	Gene Family Method
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.02	OrthoFinder output from all 47 species
Ala_g06279	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	OrthoFinder output from all 47 species
Als_g03868	CHR11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g14847	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g23375	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01315	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000350.9	PKR2	CHD3-type chromatin-remodeling factor PICKLE...	0.01	OrthoFinder output from all 47 species
Dac_g22721	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g19573	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g29228	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Msp_g44223	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g11799	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23435	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g09028	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g37141	CHR17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e011541_P001	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	475	588
IPR000330	SNF2_N	174	454

External Links

No external refs found!

Aob_g12795 (CHR11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation