Aliases : EMB2261
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00155170 | CRR2,... | Pentatricopeptide repeat-containing protein At3g46790,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00022p00075660 | No alias | Pentatricopeptide repeat-containing protein At2g33680... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G77150 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT2G03380 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT4G32430 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT4G33990 | EMB2758 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G09950 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G50990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g022087 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g11079 | CRR21 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g12045 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g14625 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g15305 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g27007 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g27593 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g31582 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g36476 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g37598 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g19459 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g67885 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene34733.t1 | Aspi01Gene34733 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035815 | No alias | not classified & original description: CDS=1-2163 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0073.g037188 | CRR22 | not classified & original description: CDS=1-1875 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g20671 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29874 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g34772 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.14G013000.1 | Ceric.14G013000 | not classified & original description: pacid=50634838... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.25G031300.1 | Ceric.25G031300 | not classified & original description: pacid=50593567... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.26G043600.1 | PTAC9, OSB2,... | ssDNA-binding protein *(OSB) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g24618 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g24765 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g03759 | OSB3 | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08991 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g36025 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g21846 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22355 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g46556 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g18810.1 | LOC_Os02g18810 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g63260.3 | LOC_Os03g63260 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g64370.1 | LOC_Os03g64370 | Pentatricopeptide repeat-containing protein At5g52850,... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os04g35610.1 | LOC_Os04g35610 | RNA editing factor (SLO2) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g29800.1 | LOC_Os06g29800 | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g07780.1 | OTP84, LOC_Os09g07780 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g05143 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_59599g0010 | EMB2261 | Pentatricopeptide repeat-containing protein At2g27610... | 0.02 | OrthoFinder output from all 47 species | |
| MA_6329g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g25916 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g41721 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g24617 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g33384 | OSB1 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g34877 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g43620 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g45077 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g52106 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g57874 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g04512 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g04516 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g23575 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03628 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g30866 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0016.g006756 | CRR22 | not classified & original description: CDS=1-1713 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0047.g013488 | No alias | not classified & original description: CDS=1-3012 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g36161 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g006990.1.1 | Solyc03g006990 | Pentatricopeptide repeat-containing protein At5g66520... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g12101 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | HCCA |
| CC | GO:0005875 | microtubule associated complex | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007010 | cytoskeleton organization | IEP | HCCA |
| BP | GO:0007017 | microtubule-based process | IEP | HCCA |
| BP | GO:0007051 | spindle organization | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0022402 | cell cycle process | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043248 | proteasome assembly | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0051225 | spindle assembly | IEP | HCCA |
| MF | GO:0060090 | molecular adaptor activity | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| CC | GO:0070652 | HAUS complex | IEP | HCCA |
| BP | GO:0070925 | organelle assembly | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| BP | GO:0140694 | non-membrane-bounded organelle assembly | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 583 | 609 |
| IPR002885 | Pentatricopeptide_repeat | 450 | 478 |
| IPR002885 | Pentatricopeptide_repeat | 554 | 577 |
| IPR002885 | Pentatricopeptide_repeat | 251 | 271 |
| IPR002885 | Pentatricopeptide_repeat | 617 | 647 |
| IPR002885 | Pentatricopeptide_repeat | 484 | 509 |
| IPR002885 | Pentatricopeptide_repeat | 352 | 373 |
| IPR002885 | Pentatricopeptide_repeat | 279 | 309 |
| IPR046848 | E_motif | 697 | 759 |
| IPR002885 | Pentatricopeptide_repeat | 73 | 123 |
| IPR002885 | Pentatricopeptide_repeat | 176 | 222 |
| IPR002885 | Pentatricopeptide_repeat | 377 | 414 |
| No external refs found! |
