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  5. Aob_g16102

Aob_g16102


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g16102

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
AT1G74400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT4G25270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036768 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086048 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06415 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24224 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70432 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01610.t1 CRR22, Aspi01Gene01610 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01654.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19894.t1 Aspi01Gene19894 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20498.t1 CRR2, Aspi01Gene20498 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28051.t3 Aspi01Gene28051 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34785.t1 Aspi01Gene34785 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35085.t1 Aspi01Gene35085 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69669.t1 CRR22, Aspi01Gene69669 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72589.t1 MEF22, Aspi01Gene72589 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011342 No alias not classified & original description: CDS=1-1953 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011901 No alias not classified & original description: CDS=1-1638 0.02 OrthoFinder output from all 47 species
Azfi_s0069.g036571 No alias not classified & original description: CDS=1-1638 0.02 OrthoFinder output from all 47 species
Azfi_s0405.g068373 No alias not classified & original description: CDS=1-2967 0.03 OrthoFinder output from all 47 species
Azfi_s0889.g091250 No alias not classified & original description: CDS=1-2652 0.03 OrthoFinder output from all 47 species
Ceric.19G003900.1 Ceric.19G003900 not classified & original description: pacid=50575192... 0.02 OrthoFinder output from all 47 species
Ceric.32G057100.1 Ceric.32G057100 not classified & original description: pacid=50598475... 0.02 OrthoFinder output from all 47 species
Dac_g13633 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46370 MEF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17712 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.03 OrthoFinder output from all 47 species
Lfl_g14850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26664 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13532 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20514 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23429 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002944 No alias not classified & original description: CDS=1-2634 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003098 No alias not classified & original description: CDS=1-2883 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006956 No alias not classified & original description: CDS=1-2820 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010161 No alias not classified & original description: CDS=1-2802 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010335 No alias not classified & original description: CDS=1-1296 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015038 CRR22 not classified & original description: CDS=1-1620 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016469 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2448 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018377 REME1 not classified & original description: CDS=1-1548 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018386 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2118 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019577 No alias not classified & original description: CDS=1-2622 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022201 No alias not classified & original description: CDS=265-2808 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023714 No alias not classified & original description: CDS=1-2772 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0177.g024659 No alias not classified & original description: CDS=1-642 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025546 No alias not classified & original description: CDS=1-3414 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g026002 No alias not classified & original description: CDS=74-2389 0.04 OrthoFinder output from all 47 species
Sam_g28767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo132819 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Smo134538 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo136241 EMB2758 Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04183 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 324
IPR002885 Pentatricopeptide_repeat 176 222
IPR002885 Pentatricopeptide_repeat 479 527
IPR002885 Pentatricopeptide_repeat 377 425
IPR002885 Pentatricopeptide_repeat 74 122
IPR002885 Pentatricopeptide_repeat 251 275
IPR002885 Pentatricopeptide_repeat 150 175
IPR002885 Pentatricopeptide_repeat 582 612
IPR002885 Pentatricopeptide_repeat 654 677
IPR002885 Pentatricopeptide_repeat 619 645
IPR002885 Pentatricopeptide_repeat 554 580
No external refs found!