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  5. Aob_g18370

Aob_g18370


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g18370

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00058640 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
AT5G42940 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g14290 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aop_g26944 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene08615.t1 Aspi01Gene08615 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene15721.t1 Aspi01Gene15721 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g16820 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g36468 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
LOC_Os04g51400.2 LOC_Os04g51400 E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os05g48970.1 LOC_Os05g48970 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os06g48040.1 LOC_Os06g48040 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Pir_g09761 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0363.g027301 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Smo447294 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc08g006460.3.1 Solyc08g006460 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Solyc12g014070.2.1 Solyc12g014070 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Tin_g05638 No alias RING-H2-class CTL-subclass E3 ubiquiTin ligase &... 0.03 OrthoFinder output from all 47 species
Zm00001e032327_P003 Zm00001e032327 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 813 855
No external refs found!