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  5. Aob_g22220

Aob_g22220 (BUM1, SHL, STM, WAM, WAM1, BUM)


Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g22220
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00165180 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 OrthoFinder output from all 47 species
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.02 OrthoFinder output from all 47 species
Als_g15588 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61508.t1 KNAT3, Aspi01Gene61508 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0350.g066569 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1488 0.04 OrthoFinder output from all 47 species
Azfi_s0637.g080498 KNAT4 KNOX-type transcription factor & original description: CDS=1-810 0.04 OrthoFinder output from all 47 species
Ceric.13G020400.1 KNAT3, Ceric.13G020400 KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.20G046300.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g03972 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11389 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30696 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01004811001 BUM1, SHL, STM,... RNA biosynthesis.transcriptional activation.HB... 0.06 OrthoFinder output from all 47 species
GSVIVT01007715001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.06 OrthoFinder output from all 47 species
GSVIVT01013790001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01018257001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
GSVIVT01031241001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Gb_14470 BP, BP1, KNAT1 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os01g19694.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
LOC_Os03g47022.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os03g51690.2 BP, BP1, KNAT1,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
LOC_Os03g51710.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os03g56140.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os05g03884.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Len_g00731 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09348 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06541 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25497 KNAT4 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g62008 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019791 KNAT4 not classified & original description: CDS=1-396 0.03 OrthoFinder output from all 47 species
Sam_g27266 No alias KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36645 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40671 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo159366 BP, BP1, KNAT1 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Solyc01g100510.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Solyc02g081120.4.1 BUM1, SHL, STM,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Solyc05g005090.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Zm00001e005545_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Zm00001e005825_P002 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Zm00001e029453_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005541 KNOX2 219 264
IPR008422 Homeobox_KN_domain 348 387
IPR005539 ELK_dom 310 329
IPR005540 KNOX1 166 204
No external refs found!