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  5. Aob_g23626

Aob_g23626 (OTP84)


Aliases : OTP84

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g23626

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00252600 MEF1 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
AT3G24000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g012308 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g055417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04983 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24343 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04417 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58397 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene43851.t1 Aspi01Gene43851 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000662 No alias not classified & original description: CDS=1-2844 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012398 No alias not classified & original description: CDS=1-3681 0.02 OrthoFinder output from all 47 species
Azfi_s0034.g025187 OTP84 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Azfi_s0094.g043395 No alias not classified & original description: CDS=1-2703 0.02 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.06 OrthoFinder output from all 47 species
Azfi_s0232.g059290 No alias not classified & original description: CDS=1-3606 0.05 OrthoFinder output from all 47 species
Azfi_s0410.g068507 No alias not classified & original description: CDS=1-2022 0.04 OrthoFinder output from all 47 species
Ceric.07G068400.1 Ceric.07G068400 not classified & original description: pacid=50628071... 0.04 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.03 OrthoFinder output from all 47 species
Ceric.22G034400.1 Ceric.22G034400 not classified & original description: pacid=50613809... 0.03 OrthoFinder output from all 47 species
Ceric.23G013400.1 Ceric.23G013400 not classified & original description: pacid=50609831... 0.04 OrthoFinder output from all 47 species
Ceric.29G017900.1 Ceric.29G017900 not classified & original description: pacid=50624370... 0.05 OrthoFinder output from all 47 species
Ceric.34G057700.1 CRR2, Ceric.34G057700 not classified & original description: pacid=50623387... 0.04 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.04 OrthoFinder output from all 47 species
Dac_g35670 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06431 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08718 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08744 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g16528 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16645 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21328 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26411 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g31630 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36067 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12128 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16902 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.05 OrthoFinder output from all 47 species
LOC_Os01g46230.1 MEF1, LOC_Os01g46230 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
LOC_Os02g07050.1 LOC_Os02g07050 Pentatricopeptide repeat-containing protein At4g20770... 0.04 OrthoFinder output from all 47 species
LOC_Os03g04390.1 LOC_Os03g04390 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g41530.1 LOC_Os03g41530 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
LOC_Os04g35650.1 LOC_Os04g35650 Pentatricopeptide repeat-containing protein At3g26540... 0.04 OrthoFinder output from all 47 species
LOC_Os04g41120.1 LOC_Os04g41120 Pentatricopeptide repeat-containing protein At4g38010... 0.03 OrthoFinder output from all 47 species
LOC_Os06g27790.1 REME1, LOC_Os06g27790 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
LOC_Os06g40860.1 LOC_Os06g40860 Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
LOC_Os07g05560.1 LOC_Os07g05560 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
LOC_Os08g38610.1 LOC_Os08g38610 Pentatricopeptide repeat-containing protein At1g26900,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os11g37330.2 LOI1, MEF11,... RNA editing factor (MEF11) 0.03 OrthoFinder output from all 47 species
Len_g04746 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23050 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24382 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g36699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Msp_g04440 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g07729 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07318 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19044 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38625 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26038 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02677 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g01222 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000505 CRR2 not classified & original description: CDS=1-1110 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002051 REME1 not classified & original description: CDS=1-1467 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008324 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008533 No alias not classified & original description: CDS=1-2436 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017192 No alias not classified & original description: CDS=402-2123 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018668 No alias ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022787 No alias not classified & original description: CDS=1-1491 0.04 OrthoFinder output from all 47 species
Sam_g07203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g065730.1.1 Solyc07g065730 Pentatricopeptide repeat-containing protein At5g66520... 0.05 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.04 OrthoFinder output from all 47 species
Solyc11g065250.1.1 EMB2744, Solyc11g065250 Pentatricopeptide repeat-containing protein At5g39680... 0.04 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16966 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Zm00001e007597_P001 Zm00001e007597 Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 477 525
IPR002885 Pentatricopeptide_repeat 275 322
IPR002885 Pentatricopeptide_repeat 376 424
IPR002885 Pentatricopeptide_repeat 552 576
IPR002885 Pentatricopeptide_repeat 177 205
IPR046848 E_motif 597 657
IPR032867 DYW_dom 693 783
IPR002885 Pentatricopeptide_repeat 101 157
No external refs found!