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  5. Lfl_g23689

Lfl_g23689 (GRP2B, ATGRP2B, ATCSP4)


Aliases : GRP2B, ATGRP2B, ATCSP4

Description : cold-responsive mRNA chaperone *(CSD) & original description: none


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g23689
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00167350 No alias External stimuli response.temperature.Csd... 0.02 OrthoFinder output from all 47 species
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.02 OrthoFinder output from all 47 species
Adi_g042846 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Als_g03295 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0034.g025234 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Ceric.39G049600.1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Dde_g01349 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01024055001 ATCSP2, GRP2, CSDP2, CSP2 External stimuli response.temperature.Csd... 0.03 OrthoFinder output from all 47 species
Gb_15589 ATCSP2, GRP2, CSDP2, CSP2 RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Msp_g32238 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g24809 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g45087 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Spa_g43386 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 8 72
No external refs found!