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  5. Aob_g27000

Aob_g27000


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g27000
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00176600 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00240190 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G47720 OSB1 Primosome PriB/single-strand DNA-binding 0.03 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005699 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g061031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g081057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06729 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18317 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37757 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g10792 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19283 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33642 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16794 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16850 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28235 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33231.t1 CRR22, Aspi01Gene33231 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49892.t1 Aspi01Gene49892 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70663.t1 Aspi01Gene70663 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02644 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19307 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.04 OrthoFinder output from all 47 species
Ceric.16G072300.1 Ceric.16G072300 not classified & original description: pacid=50590183... 0.04 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.03 OrthoFinder output from all 47 species
Ceric.1Z081600.1 CRR22, Ceric.1Z081600 not classified & original description: pacid=50582216... 0.04 OrthoFinder output from all 47 species
Ceric.26G016100.1 OTP84, Ceric.26G016100 not classified & original description: pacid=50599360... 0.04 OrthoFinder output from all 47 species
Ceric.30G024700.1 Ceric.30G024700 not classified & original description: pacid=50608167... 0.03 OrthoFinder output from all 47 species
Ceric.37G004200.1 Ceric.37G004200 not classified & original description: pacid=50616137... 0.03 OrthoFinder output from all 47 species
Dac_g25020 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42748 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08744 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g13254 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40775 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g44127 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g15735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15886 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23215 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g40545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07052 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019231001 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
LOC_Os01g11470.1 LOC_Os01g11470 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g13830.1 LOC_Os03g13830 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
LOC_Os06g27790.1 REME1, LOC_Os06g27790 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
Len_g09547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17565 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g37832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14702 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g28067 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g31355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37802 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10428509g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_139163g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g14279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14416 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48712 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10308 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24651 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43031 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03488 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30635 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.02 OrthoFinder output from all 47 species
Ppi_g22238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31411 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g34591 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007796 No alias not classified & original description: CDS=1-2022 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.02 OrthoFinder output from all 47 species
Sam_g14540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g17989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo111894 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo116559 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Smo75659 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Solyc07g005170.3.1 Solyc07g005170 Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species
Spa_g09360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10295 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13479 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001918_P001 EMB2758, Zm00001e001918 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Zm00001e008203_P002 Zm00001e008203 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Zm00001e032242_P001 Zm00001e032242 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Zm00001e032485_P001 EMB2744, Zm00001e032485 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 826 917
IPR002885 Pentatricopeptide_repeat 686 709
IPR002885 Pentatricopeptide_repeat 583 610
IPR046848 E_motif 728 790
IPR002885 Pentatricopeptide_repeat 5 51
IPR002885 Pentatricopeptide_repeat 611 658
IPR002885 Pentatricopeptide_repeat 307 355
IPR002885 Pentatricopeptide_repeat 509 557
IPR002885 Pentatricopeptide_repeat 105 153
IPR002885 Pentatricopeptide_repeat 408 455
IPR002885 Pentatricopeptide_repeat 206 253
No external refs found!