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  5. Aob_g27190

Aob_g27190


Description : LIM-type transcription factor & original description: none


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g27190
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g014823 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077331 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11111 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010765 No alias LIM-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Cba_g04896 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10082 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39812 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27988 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g05020 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001741 WLIM1 LIM-type transcription factor & original description: CDS=1-612 0.04 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e029431_P002 WLIM1, Zm00001e029431 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004864 protein phosphatase inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019212 phosphatase inhibitor activity IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 146 201
IPR001781 Znf_LIM 49 104
No external refs found!