Aob_g28208 (ATPUB17, PUB17)

Aliases : ATPUB17, PUB17

Description : not classified & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g28208

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	PUB15,...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT5G01830	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Adi_g017517	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g019046	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g026489	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g057744	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g080188	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g102535	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g09883	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g06711	PUB18, ATPUB18	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene31832.t1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene36180.t1	Aspi01Gene36180	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene37780.t1	PUB13, ATPUB13,...	E3 ubiquitin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000295	No alias	not classified & original description: CDS=1-2304	0.02	OrthoFinder output from all 47 species
Azfi_s0579.g078276	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=173-2116	0.03	OrthoFinder output from all 47 species
Ceric.1Z057600.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Cre03.g178550	No alias	Dynein assembly factor with WDR repeat domains 1...	0.01	OrthoFinder output from all 47 species
Dac_g40757	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g04450	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03347	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g06975	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01007275001	PUB9, ATPUB9	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01009347001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
LOC_Os01g72600.1	LOC_Os01g72600	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os08g37570.1	PUB15, LOC_Os08g37570	U-box domain-containing protein 15 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_10329986g0010	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_468267g0010	PUB9, ATPUB9	U-box domain-containing protein 13 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_84321g0010	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Msp_g37725	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g18678	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g05165	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016119	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1314-3077	0.02	OrthoFinder output from all 47 species
Smo415326	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
Solyc04g050780.2.1	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Solyc06g076040.3.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Solyc09g018230.1.1	Solyc09g018230	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Tin_g07352	ATPUB17, PUB17	E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003398_P001	PUB15, Zm00001e003398	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e028839_P001	Zm00001e028839	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	517	554
IPR000225	Armadillo	433	470
IPR003613	Ubox_domain	299	369

External Links

No external refs found!

Aob_g28208 (ATPUB17, PUB17)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation