Aliases : DOT4
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00077p00031710 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G57430 | OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g003135 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g003282 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g003839 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g004975 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g008014 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g009482 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g016795 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g035018 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g036420 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g069068 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g069188 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g086259 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g099272 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g07982 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g21063 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g04378 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05917 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06398 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18887 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g26399 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30597 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g06037 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000142 | No alias | not classified & original description: CDS=1-1389 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0035.g025724 | No alias | not classified & original description: CDS=1-3840 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0144.g051584 | No alias | not classified & original description: CDS=1-1965 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g04046 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g04726 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g07719 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g20251 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29529 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g34770 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g42618 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g75130 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.11G081200.1 | Ceric.11G081200 | not classified & original description: pacid=50594979... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.13G082600.1 | Ceric.13G082600 | not classified & original description: pacid=50636923... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.14G058600.1 | PTAC9, OSB2,... | ssDNA-binding protein *(OSB) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G024700.1 | Ceric.18G024700 | not classified & original description: pacid=50621916... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.28G052000.1 | OTP86, Ceric.28G052000 | not classified & original description: pacid=50569960... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.29G039600.1 | Ceric.29G039600 | not classified & original description: pacid=50625761... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g06831 | PTAC9, OSB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g08687 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g35824 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g35962 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g50838 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g02932 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g05954 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g15390 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g15735 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g21312 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g22021 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22368 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g38178 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01022208001 | No alias | Pentatricopeptide repeat-containing protein At4g19191,... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01035618001 | No alias | Pentatricopeptide repeat-containing protein At3g09040,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_17092 | CRR22 | RNA editing factor (OTP82) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g10800.1 | DOT4, LOC_Os01g10800 | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g04367 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g11975 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_137736g0010 | REME1 | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| MA_71104g0010 | CRR22 | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g14847 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g32352 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g02558 | EMB2261 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g12578 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03156 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g12921 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g22255 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g36018 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g52827 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59317 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0153.g023530 | CRR22 | not classified & original description: CDS=1-2073 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g12066 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g29586 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g30171 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39247 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g50428 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g006990.1.1 | Solyc03g006990 | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g50449 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g10295 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e002552_P001 | Zm00001e002552 | RNA editing factor (SEL1/PDM1) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e033826_P001 | Zm00001e033826 | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e034445_P001 | LPA66, Zm00001e034445 | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 538 | 585 |
| IPR002885 | Pentatricopeptide_repeat | 139 | 177 |
| IPR002885 | Pentatricopeptide_repeat | 36 | 83 |
| IPR002885 | Pentatricopeptide_repeat | 437 | 483 |
| IPR002885 | Pentatricopeptide_repeat | 339 | 386 |
| IPR002885 | Pentatricopeptide_repeat | 238 | 285 |
| IPR046848 | E_motif | 657 | 717 |
| IPR002885 | Pentatricopeptide_repeat | 11 | 35 |
| IPR002885 | Pentatricopeptide_repeat | 312 | 337 |
| IPR002885 | Pentatricopeptide_repeat | 112 | 135 |
| IPR002885 | Pentatricopeptide_repeat | 612 | 634 |
| No external refs found! |
