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  5. Aob_g28220

Aob_g28220


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AMTR_s00039p00210570 EMB2758 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 OrthoFinder output from all 47 species
AMTR_s00122p00115170 CRR21 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
Adi_g003806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055183 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07468 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07375 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18405 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33735 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39732 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09002 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26957 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40270 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09405 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19351 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28235 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14575.t2 CRR22, Aspi01Gene14575 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0082.g038704 No alias not classified & original description: CDS=1-2661 0.03 OrthoFinder output from all 47 species
Azfi_s0138.g051109 No alias not classified & original description: CDS=1-2523 0.03 OrthoFinder output from all 47 species
Azfi_s0236.g059498 No alias not classified & original description: CDS=1-2331 0.04 OrthoFinder output from all 47 species
Azfi_s0280.g062299 OSB3 ssDNA-binding protein *(OSB) & original description: CDS=94-1002 0.03 OrthoFinder output from all 47 species
Azfi_s0529.g075791 No alias protein involved in PS-I assembly *(PYG7) & original... 0.02 OrthoFinder output from all 47 species
Cba_g03409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05714 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05882 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20671 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24173 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G011500.1 Ceric.03G011500 not classified & original description: pacid=50571528... 0.03 OrthoFinder output from all 47 species
Ceric.10G025700.1 VAC1, ECB2,... not classified & original description: pacid=50613326... 0.05 OrthoFinder output from all 47 species
Ceric.11G078400.1 Ceric.11G078400 not classified & original description: pacid=50596841... 0.03 OrthoFinder output from all 47 species
Ceric.11G093500.1 VAC1, ECB2,... not classified & original description: pacid=50595637... 0.03 OrthoFinder output from all 47 species
Ceric.13G010300.1 Ceric.13G010300 not classified & original description: pacid=50636329... 0.03 OrthoFinder output from all 47 species
Ceric.18G069700.1 CRR2, Ceric.18G069700 not classified & original description: pacid=50622363... 0.03 OrthoFinder output from all 47 species
Ceric.19G064200.1 MEF19, Ceric.19G064200 not classified & original description: pacid=50576611... 0.03 OrthoFinder output from all 47 species
Ceric.1Z062400.1 Ceric.1Z062400 not classified & original description: pacid=50637425... 0.03 OrthoFinder output from all 47 species
Ceric.1Z079200.1 CRR22, Ceric.1Z079200 not classified & original description: pacid=50582193... 0.02 OrthoFinder output from all 47 species
Ceric.25G070000.1 VAC1, ECB2,... not classified & original description: pacid=50593626... 0.03 OrthoFinder output from all 47 species
Ceric.36G059800.1 Ceric.36G059800 not classified & original description: pacid=50568853... 0.04 OrthoFinder output from all 47 species
Dcu_g07356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08906 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g21484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26858 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35824 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35843 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04371 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05938 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17941 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28218 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50253 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 OrthoFinder output from all 47 species
GSVIVT01009227001 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Gb_40766 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.02 OrthoFinder output from all 47 species
LOC_Os05g12130.1 EMB2261, LOC_Os05g12130 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.04 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.02 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g34134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59693 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05734 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15222 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Msp_g03529 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12189 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16922 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07619 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20228 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15077 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40943 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59834 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22601 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03921 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14215 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012842 CRR2 not classified & original description: CDS=114-1901 0.03 OrthoFinder output from all 47 species
Sam_g10509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12113 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11066 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 635 680
IPR002885 Pentatricopeptide_repeat 391 414
IPR002885 Pentatricopeptide_repeat 217 247
IPR002885 Pentatricopeptide_repeat 491 513
IPR002885 Pentatricopeptide_repeat 592 616
IPR002885 Pentatricopeptide_repeat 190 211
IPR002885 Pentatricopeptide_repeat 417 464
IPR002885 Pentatricopeptide_repeat 517 563
IPR002885 Pentatricopeptide_repeat 114 160
IPR002885 Pentatricopeptide_repeat 316 363
No external refs found!