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  5. Aob_g28656

Aob_g28656


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28656

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AT2G21090 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06921 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22292 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g28308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68048 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07542.t1 Aspi01Gene07542 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20496.t1 CRR22, Aspi01Gene20496 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34954.t1 Aspi01Gene34954 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000446 No alias not classified & original description: CDS=1-2970 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009381 No alias not classified & original description: CDS=1-2946 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025098 No alias not classified & original description: CDS=1-4389 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025187 OTP84 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g033972 OTP84 not classified & original description: CDS=1-2028 0.04 OrthoFinder output from all 47 species
Azfi_s0068.g036347 CRR22 not classified & original description: CDS=1-879 0.04 OrthoFinder output from all 47 species
Azfi_s0075.g037545 No alias not classified & original description: CDS=1-2337 0.04 OrthoFinder output from all 47 species
Azfi_s0081.g038619 No alias not classified & original description: CDS=1-4530 0.03 OrthoFinder output from all 47 species
Azfi_s0094.g043402 No alias not classified & original description: CDS=1-2055 0.03 OrthoFinder output from all 47 species
Azfi_s0194.g057201 No alias not classified & original description: CDS=1-3408 0.03 OrthoFinder output from all 47 species
Azfi_s0444.g070606 No alias not classified & original description: CDS=1-2982 0.03 OrthoFinder output from all 47 species
Azfi_s0658.g081282 No alias not classified & original description: CDS=13-2166 0.04 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.04 OrthoFinder output from all 47 species
Ceric.11G041000.1 Ceric.11G041000 not classified & original description: pacid=50594870... 0.03 OrthoFinder output from all 47 species
Ceric.13G028100.1 Ceric.13G028100 not classified & original description: pacid=50635194... 0.03 OrthoFinder output from all 47 species
Ceric.16G072300.1 Ceric.16G072300 not classified & original description: pacid=50590183... 0.04 OrthoFinder output from all 47 species
Ceric.17G049800.1 Ceric.17G049800 not classified & original description: pacid=50617439... 0.03 OrthoFinder output from all 47 species
Ceric.23G013400.1 Ceric.23G013400 not classified & original description: pacid=50609831... 0.03 OrthoFinder output from all 47 species
Ceric.25G002100.1 Ceric.25G002100 not classified & original description: pacid=50593112... 0.03 OrthoFinder output from all 47 species
Ceric.26G001100.1 Ceric.26G001100 not classified & original description: pacid=50598974... 0.03 OrthoFinder output from all 47 species
Ceric.26G013000.1 Ceric.26G013000 not classified & original description: pacid=50600010... 0.03 OrthoFinder output from all 47 species
Ceric.30G024700.1 Ceric.30G024700 not classified & original description: pacid=50608167... 0.03 OrthoFinder output from all 47 species
Ceric.31G027200.1 OTP86, Ceric.31G027200 not classified & original description: pacid=50574199... 0.03 OrthoFinder output from all 47 species
Ceric.37G004200.1 Ceric.37G004200 not classified & original description: pacid=50616137... 0.03 OrthoFinder output from all 47 species
Dac_g29379 OTP85 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_36839 OTP84 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Len_g03881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17590 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g22535 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48923 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009141 No alias not classified & original description: CDS=1-2487 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013956 No alias not classified & original description: CDS=1-2181 0.02 OrthoFinder output from all 47 species
Tin_g05654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26871 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 397 417
IPR002885 Pentatricopeptide_repeat 599 623
IPR002885 Pentatricopeptide_repeat 223 252
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 498 519
IPR002885 Pentatricopeptide_repeat 297 317
IPR002885 Pentatricopeptide_repeat 195 215
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 422 471
IPR002885 Pentatricopeptide_repeat 322 368
IPR046848 E_motif 641 703
No external refs found!