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  5. Aob_g28660

Aob_g28660


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28660

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
Adi_g034320 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086259 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37951 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g49149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05661 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18670 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
LOC_Os03g41530.1 LOC_Os03g41530 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
LOC_Os10g30760.1 LOC_Os10g30760 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Lfl_g07409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01662 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61335 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo102435 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo86032 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.03 OrthoFinder output from all 47 species
Solyc01g102690.4.1 Solyc01g102690 Pentatricopeptide repeat-containing protein At3g49710... 0.03 OrthoFinder output from all 47 species
Solyc06g062610.2.1 Solyc06g062610 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g44998 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53271 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e019482_P001 Zm00001e019482 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 481 526
IPR002885 Pentatricopeptide_repeat 377 414
IPR002885 Pentatricopeptide_repeat 1 21
IPR002885 Pentatricopeptide_repeat 76 121
IPR002885 Pentatricopeptide_repeat 277 324
IPR002885 Pentatricopeptide_repeat 251 273
IPR002885 Pentatricopeptide_repeat 49 71
IPR002885 Pentatricopeptide_repeat 178 208
IPR002885 Pentatricopeptide_repeat 150 174
IPR002885 Pentatricopeptide_repeat 555 577
IPR002885 Pentatricopeptide_repeat 453 475
IPR046848 E_motif 597 658
No external refs found!