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  5. Aob_g28675

Aob_g28675


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g28675

Target Alias Description ECC score Gene Family Method Actions
AT5G13270 RARE1 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076457 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085510 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21063 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32922 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008760 No alias not classified & original description: CDS=1-2934 0.03 OrthoFinder output from all 47 species
Azfi_s0164.g054263 No alias not classified & original description: CDS=137-2560 0.03 OrthoFinder output from all 47 species
Ceric.28G056200.1 Ceric.28G056200 not classified & original description: pacid=50570685... 0.02 OrthoFinder output from all 47 species
Dde_g47657 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04787 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07721 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28439 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g36973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
Msp_g34533 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33886 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10282 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06463 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
InterPro domains Description Start Stop
IPR046849 Eplus_motif 799 819
IPR046848 E_motif 731 793
IPR002885 Pentatricopeptide_repeat 311 359
IPR002885 Pentatricopeptide_repeat 215 257
IPR002885 Pentatricopeptide_repeat 411 459
IPR002885 Pentatricopeptide_repeat 512 560
IPR002885 Pentatricopeptide_repeat 109 156
IPR002885 Pentatricopeptide_repeat 688 712
IPR002885 Pentatricopeptide_repeat 652 678
IPR002885 Pentatricopeptide_repeat 588 613
IPR002885 Pentatricopeptide_repeat 185 210
IPR002885 Pentatricopeptide_repeat 616 646
No external refs found!