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  5. Aob_g30519

Aob_g30519


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g30519
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Adi_g069256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07716 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g17904 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g27208 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34749.t1 Aspi01Gene34749 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42015.t1 Aspi01Gene42015 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56416.t1 CRR22, Aspi01Gene56416 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023748 CRR22 not classified & original description: CDS=1-2115 0.03 OrthoFinder output from all 47 species
Azfi_s0083.g038826 No alias not classified & original description: CDS=1-2151 0.03 OrthoFinder output from all 47 species
Cba_g02717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g18562 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37951 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g38005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g66773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g03359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18287 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16793 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17218 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26344 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_27491 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60250.1 LOC_Os01g60250 Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
Len_g05421 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25856 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07429 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39239 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03944 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12042 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23872 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g24441 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g26402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51690 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Smo83339 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Smo92426 EMB2758 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Tin_g11710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 34 61
IPR002885 Pentatricopeptide_repeat 509 533
IPR002885 Pentatricopeptide_repeat 104 131
IPR002885 Pentatricopeptide_repeat 308 331
IPR002885 Pentatricopeptide_repeat 207 229
IPR002885 Pentatricopeptide_repeat 233 280
IPR002885 Pentatricopeptide_repeat 333 381
IPR002885 Pentatricopeptide_repeat 435 481
IPR002885 Pentatricopeptide_repeat 133 179
No external refs found!