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  5. Lfl_g24303

Lfl_g24303 (CCR2, ATGRP7, GRP7, GR-RBP7)


Aliases : CCR2, ATGRP7, GRP7, GR-RBP7

Description : not classified & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g24303
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00256900 GRP2, ATGRP2,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00132070 ATRZ-1A,... Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00073410 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 6, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.01 OrthoFinder output from all 47 species
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.03 OrthoFinder output from all 47 species
Adi_g010819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022150 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g043489 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058531 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108265 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09046 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g28161 ATRZ-1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38249 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g27510 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g37833 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g41447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52291 GR-RBP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12386 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene16813.t1 GRP2, ATGRP2,... RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16822.t1 GRP2, ATGRP2,... RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18654.t1 GR-RBP3, Aspi01Gene18654 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030451 No alias not classified & original description: CDS=165-734 0.04 OrthoFinder output from all 47 species
Cba_g01674 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06390 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G070400.1 CCR2, ATGRP7,... not classified & original description: pacid=50608368... 0.02 OrthoFinder output from all 47 species
Dac_g10484 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24341 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g33383 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g52563 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26781 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g61990.3 ATRZ-1A, LOC_Os03g61990 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
LOC_Os07g36490.1 LOC_Os07g36490 RNA editing factor (ORRM) 0.01 OrthoFinder output from all 47 species
Lfl_g25551 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_9594430g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.01 OrthoFinder output from all 47 species
Ore_g20446 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26664 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32937 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05754 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12344 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17461 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g33631 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08398 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c12_23410V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.02 OrthoFinder output from all 47 species
Pp3c7_3360V3.1 CCR1, GR-RBP8,... cold, circadian rhythm, and RNA binding 1 0.01 OrthoFinder output from all 47 species
Ppi_g25732 ATRZ-1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g047130.2.1 ATRZ-1A, Solyc10g047130 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Spa_g12557 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22379 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07967 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028481_P002 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 50 118
No external refs found!