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  5. Lfl_g24820

Lfl_g24820


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g24820
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00089020 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
AT1G60360 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G01980 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G53910 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g13947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g62505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13373 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_10869 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_30381 RHC1A Probable E3 ubiquitin-protein ligase RHC2A... 0.02 OrthoFinder output from all 47 species
Lfl_g10238 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_289134g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Msp_g14693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03817 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g62548 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011411 No alias not classified & original description: CDS=1-1419 0.03 OrthoFinder output from all 47 species
Solyc01g009000.3.1 RHC1A, Solyc01g009000 Probable E3 ubiquitin-protein ligase RHC1A... 0.04 OrthoFinder output from all 47 species
Spa_g00737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09981 RHC1A not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 472 513
No external refs found!