Aob_g38427 (AGL9, SEP3)

Aliases : AGL9, SEP3

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g38427
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.02	OrthoFinder output from all 47 species
Als_g56732	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.1Z165900.1	Ceric.1Z165900	not classified & original description: pacid=50600415...	0.02	OrthoFinder output from all 47 species
Ehy_g07431	AGL6	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01035477001	AGL30	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
LOC_Os03g54160.1	AGL7, AP1, LOC_Os03g54160	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_44428g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Pnu_g09891	AGL66	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g42311	AGL3, SEP4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g62341	ANR1, AGL44	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo85851	AGL10, CAL1, CAL	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Solyc01g106720.1.1	AGL62, Solyc01g106720	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Tin_g23921	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0043631	RNA polyadenylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	60	107
IPR002487	TF_Kbox	135	220

External Links

No external refs found!

Aob_g38427 (AGL9, SEP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation