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  5. Aob_g40045

Aob_g40045 (EMB2758)


Aliases : EMB2758

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g40045
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00243230 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g018291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g23916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42281 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g44160 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g48329 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g12544 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12986 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25155 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25481 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35641 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35744 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38631 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19032 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30778 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28195 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28234 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g33250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16384 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g17318 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene03942.t1 Aspi01Gene03942 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06316.t1 Aspi01Gene06316 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25991.t2 Aspi01Gene25991 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene27915.t1 Aspi01Gene27915 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34548.t1 Aspi01Gene34548 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34727.t1 Aspi01Gene34727 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44451.t1 CRR2, Aspi01Gene44451 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54509.t1 Aspi01Gene54509 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70663.t1 Aspi01Gene70663 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0119.g046740 No alias not classified & original description: CDS=1-2259 0.05 OrthoFinder output from all 47 species
Cba_g07753 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20715 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g46020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05578 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30123 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g37780 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05677 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17095 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35844 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39805 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47945 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g42846 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Len_g01382 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18584 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g34035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54495 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g15171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_121512g0010 No alias ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_138689g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28772 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g36814 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g40908 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38632 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09943 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14351 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26038 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12351 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03458 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g15292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20514 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g22252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.02 OrthoFinder output from all 47 species
Ppi_g06501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07547 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30547 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g02656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12346 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24543 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28758 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g29120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g45773 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g46652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50518 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo26993 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Smo96499 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Solyc01g095160.3.1 Solyc01g095160 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
Solyc04g005460.1.1 OTP82, Solyc04g005460 Pentatricopeptide repeat-containing protein At2g20540... 0.05 OrthoFinder output from all 47 species
Solyc05g023900.1.1 Solyc05g023900 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g18513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001200_P001 Zm00001e001200 Pentatricopeptide repeat-containing protein At5g59600... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 245 292
IPR002885 Pentatricopeptide_repeat 346 393
IPR002885 Pentatricopeptide_repeat 548 597
IPR002885 Pentatricopeptide_repeat 447 493
IPR032867 DYW_dom 764 854
IPR002885 Pentatricopeptide_repeat 146 175
IPR002885 Pentatricopeptide_repeat 320 344
IPR002885 Pentatricopeptide_repeat 421 446
IPR002885 Pentatricopeptide_repeat 623 645
IPR002885 Pentatricopeptide_repeat 522 545
IPR046848 E_motif 666 726
No external refs found!