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  5. Aob_g41219

Aob_g41219


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g41219

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
AT1G53600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G32430 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g010343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33642 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65088.t1 Aspi01Gene65088 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000442 No alias not classified & original description: CDS=1-3240 0.03 OrthoFinder output from all 47 species
Azfi_s0229.g059115 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2115 0.05 OrthoFinder output from all 47 species
Cba_g07198 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17225 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G015100.1 Ceric.04G015100 not classified & original description: pacid=50632156... 0.03 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.03 OrthoFinder output from all 47 species
Dac_g25286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33764 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40967 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00984 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Ehy_g18446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Lfl_g06637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g31355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_205762g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_482767g0010 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Nbi_g06769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40702 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32537 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g46859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07605 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019665 No alias not classified & original description: CDS=1-372 0.03 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
Spa_g50396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06120 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25192 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 286 307
IPR002885 Pentatricopeptide_repeat 387 411
IPR002885 Pentatricopeptide_repeat 314 344
IPR002885 Pentatricopeptide_repeat 415 440
IPR002885 Pentatricopeptide_repeat 754 779
IPR002885 Pentatricopeptide_repeat 690 713
IPR002885 Pentatricopeptide_repeat 783 814
IPR002885 Pentatricopeptide_repeat 513 560
IPR002885 Pentatricopeptide_repeat 109 157
IPR002885 Pentatricopeptide_repeat 210 258
IPR002885 Pentatricopeptide_repeat 615 662
IPR046848 E_motif 837 895
No external refs found!