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  5. Aob_g42240

Aob_g42240


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g42240

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00259690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46460,... 0.03 OrthoFinder output from all 47 species
Adi_g003806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g017104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g047336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057899 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Adi_g108176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11484 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17011 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g37181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06159 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13524 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g13877 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37921 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03817 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09708 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18136 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20440 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27421.t1 Aspi01Gene27421 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene33092.t1 Aspi01Gene33092 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38583.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42015.t1 Aspi01Gene42015 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45825.t1 Aspi01Gene45825 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49895.t1 CRR22, Aspi01Gene49895 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64477.t1 OTP82, Aspi01Gene64477 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66046.t1 Aspi01Gene66046 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023505 No alias not classified & original description: CDS=32-2620 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023878 No alias not classified & original description: CDS=1-2883 0.04 OrthoFinder output from all 47 species
Azfi_s0054.g033714 CRR22 not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036354 CRR22 not classified & original description: CDS=140-2386 0.03 OrthoFinder output from all 47 species
Azfi_s0164.g054282 No alias not classified & original description: CDS=1-4443 0.02 OrthoFinder output from all 47 species
Azfi_s0175.g055975 No alias not classified & original description: CDS=1-4965 0.03 OrthoFinder output from all 47 species
Azfi_s0301.g063681 REME1 not classified & original description: CDS=1-1416 0.03 OrthoFinder output from all 47 species
Azfi_s1107.g097662 No alias not classified & original description: CDS=1-2811 0.03 OrthoFinder output from all 47 species
Cba_g34432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37478 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77978 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G009700.1 VAC1, ECB2,... not classified & original description: pacid=50619980... 0.04 OrthoFinder output from all 47 species
Ceric.06G022800.1 Ceric.06G022800 not classified & original description: pacid=50620328... 0.03 OrthoFinder output from all 47 species
Ceric.1Z005100.1 Ceric.1Z005100 not classified & original description: pacid=50567700... 0.03 OrthoFinder output from all 47 species
Ceric.1Z081600.1 CRR22, Ceric.1Z081600 not classified & original description: pacid=50582216... 0.04 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.02 OrthoFinder output from all 47 species
Ceric.23G083100.1 Ceric.23G083100 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.39G004000.1 EMB2758, Ceric.39G004000 not classified & original description: pacid=50582620... 0.03 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.02 OrthoFinder output from all 47 species
Dac_g11806 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10909 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g27024 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28824 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g37552 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g40952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16902 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g29034 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021403001 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
LOC_Os11g14980.1 LOC_Os11g14980 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
Len_g02415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g34131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04862 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07681 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08907 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09949 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15222 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33290 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33303 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g33305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g11907 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g22399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25177 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48694 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27639 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01804 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03998 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32824 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45077 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12166 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19353 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07605 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09076 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42940 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g44848 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g47516 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55456 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002995 DOT4 not classified & original description: CDS=1-2349 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005912 No alias not classified & original description: CDS=1-3210 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008527 OTP84 borate transporter *(BOR) & original description: CDS=118-8541 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015038 CRR22 not classified & original description: CDS=1-1620 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015175 No alias not classified & original description: CDS=1-2994 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016434 No alias not classified & original description: CDS=1-1746 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019544 OSB3 ssDNA-binding protein *(OSB) & original description: CDS=30-812 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019756 No alias not classified & original description: CDS=1-2544 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020573 No alias not classified & original description: CDS=184-1233 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0133.g022243 No alias not classified & original description: CDS=1-1908 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026676 No alias not classified & original description: CDS=1-2475 0.02 OrthoFinder output from all 47 species
Sam_g17656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39876 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50566 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21929 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g23771 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 441 498
IPR002885 Pentatricopeptide_repeat 2 21
IPR002885 Pentatricopeptide_repeat 299 323
IPR002885 Pentatricopeptide_repeat 398 421
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 224 271
IPR002885 Pentatricopeptide_repeat 122 170
IPR002885 Pentatricopeptide_repeat 325 372
No external refs found!