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  5. Sam_g01279

Sam_g01279


Description : not classified & original description: none


Gene families : OG0000434 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g01279
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G18100 E12A11, MFT PEBP (phosphatidylethanolamine-binding protein) family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025582 E12A11, MFT not classified & original description: CDS=171-818 0.04 OrthoFinder output from all 47 species
Ceric.06G045500.1 Ceric.06G045500 not classified & original description: pacid=50620154... 0.04 OrthoFinder output from all 47 species
Ceric.22G072500.1 Ceric.22G072500 not classified & original description: pacid=50613817... 0.02 OrthoFinder output from all 47 species
Ceric.22G072600.1 Ceric.22G072600 not classified & original description: pacid=50614502... 0.04 OrthoFinder output from all 47 species
Ceric.34G007800.1 Ceric.34G007800 not classified & original description: pacid=50623830... 0.02 OrthoFinder output from all 47 species
LOC_Os01g54490.1 FT, LOC_Os01g54490 PEB protein-dependent signalling regulatory protein (PEBP) 0.03 OrthoFinder output from all 47 species
LOC_Os06g06300.1 FT, LOC_Os06g06300 PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species
Pp3c14_18740V3.1 E12A11, MFT, Pp3c14_18740 PEBP (phosphatidylethanolamine-binding protein) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g10997 E12A11, MFT not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g58271 FT not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011036 FT not classified & original description: CDS=209-856 0.02 OrthoFinder output from all 47 species
Sam_g04982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g079290.3.1 E12A11, MFT,... PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species
Solyc05g055660.3.1 FT, Solyc05g055660 PEB protein-dependent signalling regulatory protein (PEBP) 0.03 OrthoFinder output from all 47 species
Solyc06g074350.3.1 ATC, Solyc06g074350 PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species
Spa_g24387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008220_P001 ATC, Zm00001e008220 PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species
Zm00001e008880_P001 TSF, Zm00001e008880 PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species
Zm00001e026057_P001 FT, Zm00001e026057 PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species
Zm00001e027418_P001 FT, Zm00001e027418 PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species
Zm00001e039371_P002 ATC, Zm00001e039371 PEB protein-dependent signalling regulatory protein (PEBP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008914 PEBP 101 195
No external refs found!