Sam_g01778


Description : not classified & original description: none


Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g01778
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00227390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AT3G54320 WRI1, ATWRI1, ASML1, WRI Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g05705 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Aob_g27594 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Cba_g06694 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.03G054600.1 ADAP, Ceric.03G054600 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.12G002600.1 Ceric.12G002600 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.31G036600.1 Ceric.31G036600 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Cre17.g729600 RAP2.2 No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01007388001 DRG, CKC, CKC1, ANT RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
GSVIVT01009293001 DRG, CKC, CKC1, ANT RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01009294001 DRG, CKC, CKC1, ANT AP2-like ethylene-responsive transcription factor ANT... 0.03 OrthoFinder output from all 47 species
GSVIVT01029219001 AIL5, EMK, CHO1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 OrthoFinder output from all 47 species
Len_g45546 WRI1, ATWRI1, ASML1, WRI AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Spa_g50963 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA

No InterPro domains available for this sequence

No external refs found!