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  5. Sam_g03287

Sam_g03287


Description : not classified & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g03287

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00109940 PGP11,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AT3G28345 No alias ABC transporter family protein 0.02 OrthoFinder output from all 47 species
AT4G01820 PGP3, MDR3 P-glycoprotein 3 0.02 OrthoFinder output from all 47 species
AT4G25960 PGP2 P-glycoprotein 2 0.02 OrthoFinder output from all 47 species
Adi_g029160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058585 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080508 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105656 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24244 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25151 PGP2 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27372 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g29011 PGP10 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22635 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24610 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08455.t1 PGP11, Aspi01Gene08455 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12320.t2 PGP2, Aspi01Gene12320 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28299.t1 Aspi01Gene28299 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0039.g026389 PGP11 subfamily ABCB transporter & original description: CDS=323-4378 0.02 OrthoFinder output from all 47 species
Ceric.10G031400.1 PGP13, Ceric.10G031400 subfamily ABCB transporter & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000025.2 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g45466 PGP11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g44934 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028256001 PGP11 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
GSVIVT01032578001 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
LOC_Os01g50070.1 LOC_Os01g50070 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g50080.1 ATPGP4, PGP4,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os01g50160.1 PGP11, LOC_Os01g50160 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os02g09720.1 LOC_Os02g09720 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Lfl_g33330 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_102299g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_10432169g0010 PGP11 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_107576g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_138894g0010 PGP11 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_1824g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_636449g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_79399g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_93218g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g02920.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Mp3g11830.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp7g04390.1 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.06 OrthoFinder output from all 47 species
Msp_g44397 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18266 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29613 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41769 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33236 ABCB19,... ABC-B-type transporter *(AMN3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57324 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16181 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014291 PGP2 subfamily ABCB transporter & original description: CDS=1-4248 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017905 PGP11 not classified & original description: CDS=139-861 0.02 OrthoFinder output from all 47 species
Sam_g04293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo408755 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo92485 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Solyc06g009290.4.1 PGP21, Solyc06g009290 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Spa_g19381 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35292 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46427 ATPGP4, PGP4, ABCB4, MDR4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014797_P002 Zm00001e014797 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Zm00001e028117_P001 PGP11, Zm00001e028117 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Zm00001e041087_P002 Zm00001e041087 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 65 256
No external refs found!