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  5. Sam_g03342

Sam_g03342


Description : not classified & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g03342

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00051710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00129p00065710 ATL2, TL2,... Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
AT1G72220 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G42350 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.03 OrthoFinder output from all 47 species
AT4G35480 RHA3B RING-H2 finger A3B 0.03 OrthoFinder output from all 47 species
AT5G57750 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g02176 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g04682 RHA3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04034 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aob_g32159 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g21168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23491.t1 Aspi01Gene23491 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0415.g068611 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.06G057500.1 Ceric.06G057500 not classified & original description: pacid=50619209... 0.03 OrthoFinder output from all 47 species
Ceric.09G083500.1 Ceric.09G083500 not classified & original description: pacid=50586830... 0.03 OrthoFinder output from all 47 species
Dac_g30862 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g09705 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g00468 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g02548 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g05247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000015001 ATL6 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01027524001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_03844 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Gb_23076 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Gb_41385 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g14990.1 LOC_Os02g14990 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os02g15060.1 LOC_Os02g15060 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
LOC_Os02g35144.1 LOC_Os02g35144 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g36330.1 LOC_Os02g36330 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g46600.1 LOC_Os02g46600 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os04g49160.1 LOC_Os04g49160 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g29710.1 LOC_Os05g29710 RING-H2-class E3 ligase 0.06 OrthoFinder output from all 47 species
LOC_Os11g05300.1 LOC_Os11g05300 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Len_g05139 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Len_g20513 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Lfl_g12876 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g26673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_1115518g0010 ATL2, TL2 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_17390g0010 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_201391g0010 BRH1 Probable E3 ubiquitin-protein ligase RHA1A... 0.01 OrthoFinder output from all 47 species
MA_222729g0010 ATL2, TL2 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_77628g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_80729g0030 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_83882g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_96368g0010 No alias RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_98187g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Nbi_g03518 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g10157 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Nbi_g14314 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Nbi_g16553 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g03615 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ore_g14691 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g40735 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g06476 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Pir_g17726 ATL31, CNI1 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Pnu_g02769 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022556 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g18767 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc01g066430.3.1 ATL2, TL2, Solyc01g066430 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc03g112340.1.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc03g114190.1.1 Solyc03g114190 RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g123680.1.1 Solyc03g123680 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Solyc04g007500.1.1 RHA2A, Solyc04g007500 RHA2 signal transducer of abscisic acid perception 0.02 OrthoFinder output from all 47 species
Solyc05g010175.1.1 RHA2A, Solyc05g010175 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g010330.3.1 Solyc11g010330 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Solyc12g055710.1.1 ATL3, Solyc12g055710 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Spa_g03237 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g55700 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Tin_g09773 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.05 OrthoFinder output from all 47 species
Zm00001e007956_P001 ATRING1, RING1,... RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Zm00001e008560_P001 RHA2A, Zm00001e008560 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e014709_P001 Zm00001e014709 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e015374_P001 Zm00001e015374 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e016470_P001 Zm00001e016470 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e019779_P001 Zm00001e019779 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e023238_P001 Zm00001e023238 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e023832_P001 ATL31, CNI1,... RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e031874_P001 Zm00001e031874 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e034421_P001 ATL6, Zm00001e034421 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 90 134
No external refs found!