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  5. Sam_g06188

Sam_g06188


Description : alpha-class expansin & original description: none


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06188
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00115760 ATEXP7, EXPA7,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 OrthoFinder output from all 47 species
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
AMTR_s00119p00058870 ATEXPA1, EXP1,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 OrthoFinder output from all 47 species
AT2G37640 ATEXPA3, EXP3,... Barwin-like endoglucanases superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G29030 EXP5, ATHEXP... expansin A5 0.04 OrthoFinder output from all 47 species
AT4G28250 EXPB3, ATEXPB3,... expansin B3 0.02 OrthoFinder output from all 47 species
AT5G02260 EXP9, EXPA9,... expansin A9 0.02 OrthoFinder output from all 47 species
Adi_g052087 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17560 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13303 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22877 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24380 EXPA2, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11063 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Als_g46764 ATEXPA10,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g20801 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32812 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12770 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g35135 ATEXPA1, EXP1,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene40395.t1 EXPA2, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41815.t1 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45683.t1 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0041.g026744 EXPA16, ATHEXP... alpha-class expansin & original description: CDS=9-821 0.05 OrthoFinder output from all 47 species
Azfi_s0206.g057815 EXPA16, ATHEXP... alpha-class expansin & original description: CDS=254-1036 0.04 OrthoFinder output from all 47 species
Azfi_s0291.g063336 ATEXPA10,... alpha-class expansin & original description: CDS=142-915 0.03 OrthoFinder output from all 47 species
Azfi_s0578.g078256 EXPA16, ATHEXP... alpha-class expansin & original description: CDS=388-1158 0.04 OrthoFinder output from all 47 species
Azfi_s0959.g093909 No alias not classified & original description: CDS=1-708 0.03 OrthoFinder output from all 47 species
Cba_g08546 No alias alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G087800.1 ATEXPA10,... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.06G052200.1 ATEXPA4, ATEXP4,... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.06G057000.1 EXPA2, ATHEXP... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.06G060100.1 EXPB3, ATEXPB3,... not classified & original description: pacid=50620545... 0.02 OrthoFinder output from all 47 species
Ceric.10G048600.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G026000.1 ATEXPA10,... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.17G039600.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.17G042200.1 ATEXPA10,... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.25G024500.1 EXPA16, ATHEXP... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.26G037600.1 ATEXPA3, EXP3,... alpha-class expansin & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.32G061800.1 ATEXPA4, ATEXP4,... alpha-class expansin & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G054100.1 ATEXPA3, EXP3,... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g15716 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g37896 EXP15, ATEXPA15,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g05265 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06200 EXPA8, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14507 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19493 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g30387 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29444 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46089 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48928 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005917001 ATHEXP BETA 3.1,... Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01018163001 ATHEXP BETA 1.4,... Putative expansin-B2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01018168001 ATHEXP BETA 1.4,... Putative expansin-B2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01023919001 ATEXPL2, EXPL2,... Cell wall.cell wall proteins.expansins.alpha-like-type expansin 0.03 OrthoFinder output from all 47 species
GSVIVT01025509001 ATEXPA10,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01032681001 EXPA8, ATHEXP... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
GSVIVT01035233001 ATEXP13,... Expansin-A13 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_01048 EXP15, ATEXPA15,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Gb_10700 ATHEXP BETA 3.1,... beta-like-class expansin 0.01 OrthoFinder output from all 47 species
Gb_20678 EXP15, ATEXPA15,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
LOC_Os01g14660.1 ATHEXP ALPHA... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os01g16770.1 ATEXPA10,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os02g16730.1 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os02g44108.1 ATHEXP BETA 1.4,... Expansin-B11 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os03g44290.1 ATHEXP BETA 1.1,... Expansin-B12 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os04g15840.1 LOC_Os04g15840 alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os04g46650.1 ATHEXP BETA 1.4,... Expansin-B5 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os06g01920.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os07g31390.1 ATEXPL2, EXPL2,... beta-like-class expansin 0.01 OrthoFinder output from all 47 species
LOC_Os08g44790.1 ATEXPA3, EXP3,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g39110.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Len_g18380 ATEXPA11, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22797 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Len_g46726 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39394 EXPB3, ATEXPB3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10425823g0010 ATEXPA4, ATEXP4,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
MA_10433559g0020 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
MA_134592g0010 EXPA16, ATHEXP... alpha-class expansin 0.01 OrthoFinder output from all 47 species
MA_229510g0010 EXPA2, ATHEXP... Expansin-A2 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_2687768g0010 EXPA8, ATHEXP... alpha-class expansin 0.03 OrthoFinder output from all 47 species
MA_30127g0010 EXPA8, ATHEXP... alpha-class expansin 0.03 OrthoFinder output from all 47 species
MA_36587g0010 EXPA8, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
MA_467939g0010 ATEXPL2, EXPL2,... alpha-like-class expansin 0.02 OrthoFinder output from all 47 species
MA_9323664g0010 EXPB1, ATEXPB1,... Expansin-B3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Mp1g22700.1 EXP15, ATEXPA15,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Mp1g24390.1 EXPA6, ATEXP6,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp1g26350.1 ATEXP14, EXPA14,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Mp3g03890.1 ATEXPA1, EXP1,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp8g18860.1 ATEXPA4, ATEXP4,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Msp_g43362 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44169 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44170 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08930 EXPB1, ATEXPB1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09043 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30072 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33755 ATEXPA4, ATEXP4,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g44684 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g45904 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c21_1850V3.1 ATEXPA10,... expansin A1 0.02 OrthoFinder output from all 47 species
Ppi_g24739 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004587 ATEXPA10,... alpha-class expansin & original description: CDS=259-1032 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006536 ATEXPA10,... alpha-class expansin & original description: CDS=1521-2813 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009901 ATEXPA10,... alpha-class expansin & original description: CDS=444-1193 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011304 EXPA8, ATHEXP... alpha-class expansin & original description: CDS=181-945 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g019977 ATEXPA4, ATEXP4,... alpha-class expansin & original description: CDS=392-1180 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g019980 ATEXPA4, ATEXP4,... alpha-class expansin & original description: CDS=1-819 0.03 OrthoFinder output from all 47 species
Smo409954 EXPA8, ATHEXP... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
Smo91129 EXP15, ATEXPA15,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 OrthoFinder output from all 47 species
Solyc02g088100.3.1 ATEXPA10,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Solyc03g115890.3.1 EXP15, ATEXPA15,... alpha-class expansin 0.04 OrthoFinder output from all 47 species
Solyc04g081870.4.1 ATEXPA11, ATHEXP... alpha-class expansin 0.04 OrthoFinder output from all 47 species
Solyc06g076220.3.1 EXPA6, ATEXP6,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Solyc08g007780.3.1 EXPA18, EXP18,... Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Solyc08g077330.3.1 ATHEXP BETA 3.1,... beta-like-class expansin 0.02 OrthoFinder output from all 47 species
Solyc08g080060.4.1 ATEXP7, EXPA7,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Solyc09g010860.4.1 ATEXPA3, EXP3,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Spa_g15584 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15585 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25448 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25562 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03133 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30401 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g31784 EXPB3, ATEXPB3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000429_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e003888_P001 ATEXPA3, EXP3,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e004713_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e004720_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e006194_P001 ATEXPA3, EXP3,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e017221_P001 ATEXPA1, EXP1,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e019433_P001 ATEXPA1, EXP1,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Zm00001e033407_P001 ATHEXP BETA 1.1,... Expansin-B11 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e037879_P001 ATHEXP BETA 1.4,... Expansin-B3 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e037885_P001 ATHEXP BETA 1.4,... Expansin-B6 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e041519_P002 ATHEXP BETA 1.4,... Expansin-B5 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 116 201
IPR007117 Expansin_CBD 212 289
No external refs found!