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  5. Sam_g06842

Sam_g06842


Description : not classified & original description: none


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06842
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00197820 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00032260 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00061p00142700 ATRBP31, CP31,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AT2G35410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.04 OrthoFinder output from all 47 species
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.05 OrthoFinder output from all 47 species
Ala_g12603 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05873 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07142 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14081 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25641.t1 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0017.g014465 ATRBP31, CP31,... not classified & original description: CDS=173-1078 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g026033 No alias not classified & original description: CDS=1-825 0.04 OrthoFinder output from all 47 species
Azfi_s0159.g053948 ATRBP31, CP31,... not classified & original description: CDS=143-1057 0.03 OrthoFinder output from all 47 species
Dde_g00421 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g00942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10561 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007596001 CP31B RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01013146001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 OrthoFinder output from all 47 species
GSVIVT01032039001 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
GSVIVT01032361001 CP31B RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Gb_28108 CP31B 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g57010.1 LOC_Os02g57010 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g25960.1 LOC_Os03g25960 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g50110.1 LOC_Os04g50110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os07g06450.1 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os08g44290.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
LOC_Os09g39180.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Len_g16035 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434075g0010 CP31B component psPSRP2 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
MA_136464g0010 ATRBP31, CP31,... 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
MA_65183g0010 No alias component psPSRP2 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Mp3g24820.1 CP31B RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Nbi_g02906 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g11334 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19962 CP31B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021464 CP31B not classified & original description: CDS=19-840 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s2652.g028437 ATRBP31, CP31,... not classified & original description: CDS=99-959 0.03 OrthoFinder output from all 47 species
Solyc01g006940.4.1 PDE322, CP33,... 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Solyc03g111840.3.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.04 OrthoFinder output from all 47 species
Solyc08g076840.3.1 Solyc08g076840 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Solyc09g090960.4.1 Solyc09g090960 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Solyc10g086150.2.1 Solyc10g086150 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Spa_g08465 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05046 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003947_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.02 OrthoFinder output from all 47 species
Zm00001e016211_P001 Zm00001e016211 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Zm00001e022086_P002 ATRBP31, CP31,... RNA editing factor (CP31) 0.02 OrthoFinder output from all 47 species
Zm00001e032835_P001 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e033465_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.02 OrthoFinder output from all 47 species
Zm00001e033636_P003 Zm00001e033636 component psPSRP2 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 105 175
IPR000504 RRM_dom 204 274
No external refs found!