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  5. Sam_g06981

Sam_g06981


Description : component *(eL33) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000881_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g06981
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT1G41880 No alias Ribosomal protein L35Ae family protein 0.03 OrthoFinder output from all 47 species
Ala_g23556 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g32442 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g51649 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g08233 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.02G022500.1 Ceric.02G022500 component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.23 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre10.g459250 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Dac_g01908 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dac_g28494 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01016386001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01034025001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Gb_35488 No alias component RPL35a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp1g11470.1 No alias component RPL35a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Msp_g38265 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g40048 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g61207 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pp3c11_9630V3.1 Pp3c11_9630 Ribosomal protein L35Ae family protein 0.02 OrthoFinder output from all 47 species
Pp3c3_3480V3.1 Pp3c3_3480 Ribosomal protein L35Ae family protein 0.02 OrthoFinder output from all 47 species
Ppi_g20566 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g29241 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0278.g027080 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g00161 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g05626 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g24989 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g28484 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g32750 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g37390 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g42222 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo184773 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc03g096360.4.1 Solyc03g096360 component RPL35a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc05g052810.4.1 Solyc05g052810 component RPL35a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g05815 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g43199 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g02369 No alias component *(eL33) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e009729_P001 Zm00001e009729 component RPL35a of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001780 Ribosomal_L35A 43 144
No external refs found!