Sam_g07203


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07203

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00190360 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00195340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AT4G30700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004508 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g033552 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11263 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g23626 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40045 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63387.t1 Aspi01Gene63387 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g60651 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.04 OrthoFinder output from all 47 species
LOC_Os03g41530.1 LOC_Os03g41530 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
LOC_Os03g63260.3 LOC_Os03g63260 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35610.1 LOC_Os04g35610 RNA editing factor (SLO2) 0.02 OrthoFinder output from all 47 species
LOC_Os06g08650.1 LOC_Os06g08650 Pentatricopeptide repeat-containing protein At2g03380,... 0.02 OrthoFinder output from all 47 species
LOC_Os06g08660.1 LOC_Os06g08660 Pentatricopeptide repeat-containing protein At4g30700... 0.04 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
Lfl_g12448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g39535 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12220 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18069 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g39051 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012042 No alias not classified & original description: CDS=1-3273 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019430 No alias not classified & original description: CDS=1-4416 0.02 OrthoFinder output from all 47 species
Sam_g25159 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28758 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g34681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51324 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 272 319
IPR002885 Pentatricopeptide_repeat 373 419
IPR002885 Pentatricopeptide_repeat 174 221
IPR002885 Pentatricopeptide_repeat 449 469
IPR002885 Pentatricopeptide_repeat 347 367
IPR002885 Pentatricopeptide_repeat 76 106
No external refs found!