Sam_g07617


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07617

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00185560 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.01 OrthoFinder output from all 47 species
Adi_g003294 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003335 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011918 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g045979 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069125 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24804 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g37465 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09664 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14758 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36026 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g18934 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12064 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g34282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16410 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g37786 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g38061 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene43949.t1 OTP84, Aspi01Gene43949 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000621 No alias ssDNA-binding protein *(OSB) & original description: CDS=97-654 0.01 OrthoFinder output from all 47 species
Azfi_s0002.g001409 No alias not classified & original description: CDS=1-2469 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008304 OTP84 not classified & original description: CDS=1-2247 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g009069 CRR22 not classified & original description: CDS=1-1992 0.01 OrthoFinder output from all 47 species
Azfi_s0007.g010913 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1608 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011663 No alias not classified & original description: CDS=1-3036 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012398 No alias not classified & original description: CDS=1-3681 0.04 OrthoFinder output from all 47 species
Azfi_s0011.g012554 No alias not classified & original description: CDS=1-2283 0.01 OrthoFinder output from all 47 species
Azfi_s0039.g026450 No alias not classified & original description: CDS=1-3138 0.03 OrthoFinder output from all 47 species
Azfi_s0061.g035099 No alias not classified & original description: CDS=1-2613 0.02 OrthoFinder output from all 47 species
Azfi_s0084.g039082 No alias not classified & original description: CDS=1-2637 0.03 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.01 OrthoFinder output from all 47 species
Azfi_s0168.g054648 No alias not classified & original description: CDS=1-843 0.01 OrthoFinder output from all 47 species
Azfi_s0194.g057200 No alias not classified & original description: CDS=1-3033 0.03 OrthoFinder output from all 47 species
Azfi_s0245.g060017 No alias not classified & original description: CDS=1-2076 0.01 OrthoFinder output from all 47 species
Azfi_s0268.g061096 No alias not classified & original description: CDS=119-2467 0.02 OrthoFinder output from all 47 species
Azfi_s0282.g063034 No alias not classified & original description: CDS=389-4795 0.03 OrthoFinder output from all 47 species
Azfi_s0425.g069243 No alias not classified & original description: CDS=144-3230 0.02 OrthoFinder output from all 47 species
Azfi_s0626.g079975 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2118 0.03 OrthoFinder output from all 47 species
Azfi_s0731.g084096 No alias not classified & original description: CDS=1-3909 0.02 OrthoFinder output from all 47 species
Cba_g03394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05567 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g07750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11618 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24774 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35153 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g66427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g74874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.01 OrthoFinder output from all 47 species
Ceric.13G028100.1 Ceric.13G028100 not classified & original description: pacid=50635194... 0.02 OrthoFinder output from all 47 species
Ceric.13G082600.1 Ceric.13G082600 not classified & original description: pacid=50636923... 0.02 OrthoFinder output from all 47 species
Ceric.17G003100.1 Ceric.17G003100 not classified & original description: pacid=50617164... 0.02 OrthoFinder output from all 47 species
Ceric.18G033700.1 OTP86, Ceric.18G033700 not classified & original description: pacid=50622086... 0.02 OrthoFinder output from all 47 species
Ceric.23G019700.1 Ceric.23G019700 not classified & original description: pacid=50611424... 0.02 OrthoFinder output from all 47 species
Ceric.26G013500.1 Ceric.26G013500 not classified & original description: pacid=50600195... 0.02 OrthoFinder output from all 47 species
Ceric.26G017800.1 Ceric.26G017800 not classified & original description: pacid=50599016... 0.02 OrthoFinder output from all 47 species
Ceric.27G064200.1 Ceric.27G064200 not classified & original description: pacid=50604994... 0.02 OrthoFinder output from all 47 species
Ceric.28G055900.1 Ceric.28G055900 not classified & original description: pacid=50569676... 0.02 OrthoFinder output from all 47 species
Ceric.28G056200.1 Ceric.28G056200 not classified & original description: pacid=50570685... 0.03 OrthoFinder output from all 47 species
Ceric.29G070600.1 Ceric.29G070600 not classified & original description: pacid=50625806... 0.02 OrthoFinder output from all 47 species
Ceric.34G000500.1 Ceric.34G000500 not classified & original description: pacid=50623432... 0.03 OrthoFinder output from all 47 species
Ceric.38G024200.1 Ceric.38G024200 not classified & original description: pacid=50580039... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.28 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g35266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43254 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07165 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07711 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45945 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47882 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g50558 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22601 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28401 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.01 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.01 OrthoFinder output from all 47 species
Len_g03385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04760 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g43662 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54971 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g57437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_11765g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_210089g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
MA_23144g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Msp_g07434 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g17454 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g23149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26112 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31349 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g34503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45609 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46049 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46073 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06282 MEF22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19044 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g20606 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32044 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g36314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04351 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15455 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g30285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16492 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004227 No alias not classified & original description: CDS=1-2520 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005807 No alias not classified & original description: CDS=1-2844 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011793 OTP84 not classified & original description: CDS=139-2724 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017029 No alias not classified & original description: CDS=1-2337 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018668 No alias ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0090.g018727 No alias not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021374 No alias not classified & original description: CDS=1-1881 0.02 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26489 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo109721 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo17005 PDE247, CLB19 Pentatricopeptide repeat-containing protein At2g17210... 0.01 OrthoFinder output from all 47 species
Smo76916 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Solyc01g095160.3.1 Solyc01g095160 Pentatricopeptide repeat-containing protein At4g37170... 0.02 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
Solyc05g023900.1.1 Solyc05g023900 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc07g008480.3.1 Solyc07g008480 Pentatricopeptide repeat-containing protein At3g14730... 0.02 OrthoFinder output from all 47 species
Solyc07g065730.1.1 Solyc07g065730 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Solyc09g082170.4.1 Solyc09g082170 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
Spa_g15291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23620 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29031 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g02798 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17148 VAC1, ECB2, ATECB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g23282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041694_P001 Zm00001e041694 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!