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  5. Sam_g07983

Sam_g07983


Description : component *(SPT20/ADA5) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07983
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00266960 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT1G72390 No alias CONTAINS InterPro DOMAIN/s: Spt20 family... 0.09 OrthoFinder output from all 47 species
Adi_g085780 No alias component *(SPT20/ADA5) of SAGA transcription... 0.05 OrthoFinder output from all 47 species
Adi_g117174 No alias component *(SPT20/ADA5) of SAGA transcription... 0.06 OrthoFinder output from all 47 species
Aev_g13851 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Als_g02622 No alias component *(SPT20/ADA5) of SAGA transcription... 0.08 OrthoFinder output from all 47 species
Aob_g34090 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Aop_g10954 No alias component *(SPT20/ADA5) of SAGA transcription... 0.05 OrthoFinder output from all 47 species
Aspi01Gene45116.t1 Aspi01Gene45116 component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026918 No alias component *(SPT20/ADA5) of SAGA transcription... 0.04 OrthoFinder output from all 47 species
Ceric.13G072900.1 Ceric.13G072900 component *(SPT20/ADA5) of SAGA transcription... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.5 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dac_g38696 No alias component *(SPT20/ADA5) of SAGA transcription... 0.04 OrthoFinder output from all 47 species
Dcu_g06485 No alias component *(SPT20/ADA5) of SAGA transcription... 0.04 OrthoFinder output from all 47 species
GSVIVT01016716001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.1 OrthoFinder output from all 47 species
LOC_Os10g25200.1 LOC_Os10g25200 component SPT20/ADA5 of SAGA transcription co-activator complex 0.09 OrthoFinder output from all 47 species
Lfl_g07703 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
MA_10436298g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
MA_114383g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.01 OrthoFinder output from all 47 species
MA_911375g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Mp2g19910.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
Nbi_g32360 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Ore_g37205 No alias component *(SPT20/ADA5) of SAGA transcription... 0.07 OrthoFinder output from all 47 species
Pir_g15131 No alias component *(SPT20/ADA5) of SAGA transcription... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016193 No alias component *(SPT20/ADA5) of SAGA transcription... 0.03 OrthoFinder output from all 47 species
Solyc06g063010.4.1 Solyc06g063010 component SPT20/ADA5 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
Spa_g14369 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g49888 No alias component *(SPT20/ADA5) of SAGA transcription... 0.02 OrthoFinder output from all 47 species
Tin_g27177 No alias component *(SPT20/ADA5) of SAGA transcription... 0.02 OrthoFinder output from all 47 species
Zm00001e024750_P001 Zm00001e024750 component SPT20/ADA5 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR046467 PHL_dom 556 710
IPR046468 Spt20-like_SEP 29 185
No external refs found!