Sam_g08414


Description : scaffold nucleoporin of nuclear pore complex *(NUP88) & original description: none


Gene families : OG0005687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005687_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08414

Target Alias Description ECC score Gene Family Method Actions
Cba_g03319 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.03 OrthoFinder output from all 47 species
Ceric.22G059800.1 MOS7, Ceric.22G059800 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.02 OrthoFinder output from all 47 species
Dcu_g13196 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.03 OrthoFinder output from all 47 species
Ehy_g01560 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.02 OrthoFinder output from all 47 species
MA_10435089g0010 MOS7 NUP88 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Spa_g08998 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019321 Nucleoporin_Nup88 467 802
IPR019321 Nucleoporin_Nup88 8 218
No external refs found!