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  5. Sam_g08458

Sam_g08458


Description : not classified & original description: none


Gene families : OG0000255 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000255_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08458
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00055400 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Als_g15965 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene26382.t1 Aspi01Gene26382 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27467.t1 Aspi01Gene27467 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023718 No alias not classified & original description: CDS=66-2393 0.02 OrthoFinder output from all 47 species
Ceric.13G032100.1 Ceric.13G032100 not classified & original description: pacid=50635670... 0.02 OrthoFinder output from all 47 species
Ceric.1Z097000.1 Ceric.1Z097000 not classified & original description: pacid=50640979... 0.03 OrthoFinder output from all 47 species
Dcu_g36406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03975 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12612 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g28310.1 LOC_Os03g28310 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g34440.1 LOC_Os06g34440 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g14996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03986 No alias chaperone component *(SDJ) of SUVH-SDJ methylation... 0.02 OrthoFinder output from all 47 species
Solyc01g057660.1.1 Solyc01g057660 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc01g098250.4.1 Solyc01g098250 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g12308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21993 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26885 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g43751 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e025632_P001 Zm00001e025632 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e025633_P001 Zm00001e025633 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e041002_P001 Zm00001e041002 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e041003_P001 Zm00001e041003 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 67 128
IPR024593 DUF3444 531 733
No external refs found!