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  5. Sam_g08487

Sam_g08487


Description : component *(uL24c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006569_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08487

Target Alias Description ECC score Gene Family Method Actions
AT5G54600 No alias Translation protein SH3-like family protein 0.14 OrthoFinder output from all 47 species
Adi_g019582 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ala_g03130 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Als_g04734 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Aob_g39352 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g00183 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Azfi_s0006.g010426 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.33G048800.1 Ceric.33G048800 component *(uL24c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cre16.g652550 No alias Protein biosynthesis.organelle translation... 0.14 OrthoFinder output from all 47 species
Dac_g00331 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dcu_g00516 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ehy_g22263 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01014572001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Gb_13209 No alias 50S ribosomal protein L24, chloroplastic OS=Spinacia... 0.07 OrthoFinder output from all 47 species
LOC_Os06g46930.1 LOC_Os06g46930 component psRPL24 of large ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Len_g05147 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g05272 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
MA_10018366g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g07850.1 No alias component psRPL24 of large ribosomal subunit proteome 0.16 OrthoFinder output from all 47 species
Msp_g18519 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Nbi_g00588 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ore_g05626 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g07148 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pnu_g08885 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c15_17530V3.1 Pp3c15_17530 Translation protein SH3-like family protein 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016787 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Smo230291 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Solyc07g063960.3.1 Solyc07g063960 component psRPL24 of large ribosomal subunit proteome 0.15 OrthoFinder output from all 47 species
Spa_g00224 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Tin_g02402 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Zm00001e013043_P001 Zm00001e013043 component psRPL24 of large ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003256 Ribosomal_L24 110 172
No external refs found!