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  5. Sam_g08769

Sam_g08769


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08769
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AT3G06330 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G01070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G18760 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g33633 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36279 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69359.t1 Aspi01Gene69359 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0043.g027060 No alias not classified & original description: CDS=1-1362 0.03 OrthoFinder output from all 47 species
Azfi_s0293.g063480 No alias E3 ubiquitin ligase & original description: CDS=497-1888 0.03 OrthoFinder output from all 47 species
Dac_g07226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g19756 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034042001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_16779 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os04g01490.1 LOC_Os04g01490 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_352312g0010 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g26464 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07939 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 89 136
No external refs found!