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  5. Sam_g08957

Sam_g08957


Description : RNA helicase *(Prp2) & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08957

Target Alias Description ECC score Gene Family Method Actions
AT2G35340 MEE29 helicase domain-containing protein 0.02 OrthoFinder output from all 47 species
Aev_g14240 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10626 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g15706 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33796 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11433 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Dcu_g01933 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g57131 EMB3011 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07573 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Solyc09g008120.4.1 Solyc09g008120 RNA helicase (Prp22) 0.02 OrthoFinder output from all 47 species
Spa_g07103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036358_P005 Zm00001e036358 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Zm00001e038305_P001 Zm00001e038305 helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 950 1027
IPR007502 Helicase-assoc_dom 802 876
IPR001650 Helicase_C 612 739
No external refs found!