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  5. Sam_g08960

Sam_g08960


Description : subfamily ABCC transporter & original description: none


Gene families : OG0000037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08960
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT3G13090 ATMRP8, MRP8, ABCC6 multidrug resistance-associated protein 8 0.03 OrthoFinder output from all 47 species
Adi_g086421 MRP6, ATMRP6, ABCC8 subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117099 MRP10, ATMRP10, ABCC14 subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10897 EST3, MRP4, ATMRP4, ABCC4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06133 ATMRP14, ABCC10, MRP14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g34007 ATABCC5, MRP5,... subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0245.g059970 AtABCC2, ABCC2,... glutathione S-conjugate transporter & original... 0.03 OrthoFinder output from all 47 species
Cba_g38039 MRP6, ATMRP6, ABCC8 subfamily ABCC transporter & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g61154 ATMRP12, MRP12, ABCC11 subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g62779 MRP6, ATMRP6, ABCC8 subfamily ABCC transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.23G061900.1 ABCC1, ATABCC1,... subfamily ABCC transporter & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.190 ATABCC5, MRP5,... ABC transporter C family member 4 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020592.4 ATMRP12, MRP12, ABCC11 ABC transporter C family member 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g06904 AtABCC2, ABCC2,... glutathione S-conjugate transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04991 EST3, MRP4, ATMRP4, ABCC4 subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23951 ATABCC5, MRP5,... subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24902 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_12836 ATMRP14, ABCC10, MRP14 ABC transporter C family member 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_8849g0010 ABCC3, ATMRP3, MRP3 subfamily ABCC transporter 0.02 OrthoFinder output from all 47 species
Mp1g23430.1 ABCC3, ATMRP3, MRP3 subfamily ABCC transporter 0.02 OrthoFinder output from all 47 species
Ore_g37519 ABCC3, ATMRP3, MRP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08129 MRP6, ATMRP6, ABCC8 subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15560 ATABCC5, MRP5,... subfamily ABCC transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35735 No alias subfamily ABCC transporter & original description: none 0.03 OrthoFinder output from all 47 species
Smo267218 ATMRP14, ABCC10, MRP14 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 1002 1224
IPR011527 ABC1_TM_dom 337 603
IPR003439 ABC_transporter-like_ATP-bd 675 809
IPR003439 ABC_transporter-like_ATP-bd 1318 1466
No external refs found!