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  5. Sam_g09484

Sam_g09484


Description : Y-type thioredoxin *(Trx-Y) & original description: none


Gene families : OG0006023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g09484

Target Alias Description ECC score Gene Family Method Actions
AT1G43560 Aty2, ty2 thioredoxin Y2 0.02 OrthoFinder output from all 47 species
Als_g21672 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10461 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2407.g111239 TY1, TRX-Y1, ATY1 not classified & original description: CDS=1-519 0.03 OrthoFinder output from all 47 species
Cba_g08342 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09248 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21227 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16843 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c26_10440V3.1 Aty2, ty2, Pp3c26_10440 thioredoxin Y2 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025589 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: CDS=196-930 0.04 OrthoFinder output from all 47 species
Tin_g02462 TY1, TRX-Y1, ATY1 Y-type thioredoxin *(Trx-Y) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 96 194
No external refs found!