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  5. Sam_g09914

Sam_g09914


Description : component *(eL8) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g09914
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00218360 evm_27.TU.AmTr_v1... 60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica 0.1 OrthoFinder output from all 47 species
AMTR_s00047p00140090 evm_27.TU.AmTr_v1... 60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
AMTR_s00047p00140240 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AT2G47610 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.13 OrthoFinder output from all 47 species
AT3G62870 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.22 OrthoFinder output from all 47 species
Adi_g118076 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aev_g02937 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00994 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g38500 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g55381 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g02035 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aop_g10465 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene25478.t1 Aspi01Gene25478 component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044550 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0148.g053103 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Cba_g10534 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g46928 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ceric.08G064100.1 Ceric.08G064100 component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.28G063900.1 Ceric.28G063900 component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.22 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Cre12.g529651 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dac_g12130 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g12131 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g03427 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g30506 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dde_g01249 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g04422 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01008585001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
GSVIVT01033050001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01036540001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Gb_36761 No alias component RPL7a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Gb_36922 No alias component RPL7a of LSU proteome component 0.07 OrthoFinder output from all 47 species
LOC_Os08g23710.1 LOC_Os08g23710 component RPL7a of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os09g32976.1 LOC_Os09g32976 component RPL7a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Len_g06165 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Len_g31217 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g25988 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_109678g0010 No alias component RPL7a of LSU proteome component 0.11 OrthoFinder output from all 47 species
MA_648702g0010 No alias component RPL7a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp2g23250.1 No alias component RPL7a of LSU proteome component 0.13 OrthoFinder output from all 47 species
Mp8g17650.1 No alias component RPL7a of LSU proteome component 0.1 OrthoFinder output from all 47 species
Msp_g01446 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g10842 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g17079 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g59570 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c26_330V3.1 Pp3c26_330 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.1 OrthoFinder output from all 47 species
Pp3c9_380V3.1 Pp3c9_380 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 OrthoFinder output from all 47 species
Ppi_g16513 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g26369 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g17532 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g28791 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g28887 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g32122 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo270545 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Solyc01g097760.3.1 Solyc01g097760 component RPL7a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Solyc06g050120.3.1 Solyc06g050120 component RPL7a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Solyc06g064460.4.1 Solyc06g064460 component RPL7a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g10426 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g48863 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g40004 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Zm00001e010129_P001 Zm00001e010129 component RPL7a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e034633_P002 Zm00001e034633 component RPL7a of LSU proteome component 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 120 208
No external refs found!