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  5. Sam_g10074

Sam_g10074


Description : not classified & original description: none


Gene families : OG0000753 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10074

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00100690 AML5, ML5,... Protein MEI2-like 4 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Adi_g014262 AML5, ML5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02681 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16138.t1 AML5, ML5,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0095.g043597 AML5, ML5 not classified & original description: CDS=223-2832 0.04 OrthoFinder output from all 47 species
Ehy_g27349 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_11658 AML5, ML5 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g48790.1 AML5, ML5, LOC_Os02g48790 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Lfl_g06243 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33864 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_158676g0010 AML5, ML5 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Mp2g04470.1 AML5, ML5 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Ore_g10315 AML1, ML1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35737 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01057 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06500 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08946 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014655_P002 ML4, AML4, Zm00001e014655 Protein MEI2-like 4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e022578_P001 ML4, AML4, Zm00001e022578 Protein MEI2-like 4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003352 regulation of cilium movement IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032886 regulation of microtubule-based process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060632 regulation of microtubule-based movement IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 198 263
IPR000504 RRM_dom 113 177
IPR007201 Mei2-like_Rrm_C 522 618
No external refs found!