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  5. Sam_g10250

Sam_g10250


Description : HD-ZIP I/II-type transcription factor & original description: none


Gene families : OG0000129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10250

Target Alias Description ECC score Gene Family Method Actions
Adi_g104185 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G017800.1 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g02564 ATHB16, HB16, ATHB-16 regulatory protein *(LMI1) of floral meristem identity... 0.03 OrthoFinder output from all 47 species
Msp_g44127 ATHB3, HB-3, ATHB-3, HAT7 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g07340 HB6, ATHB6 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g16899 HB6, ATHB6 HD-ZIP I/II-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ore_g17854 ATHB3, HB-3, ATHB-3, HAT7 regulatory protein *(LMI1) of floral meristem identity... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004723 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010551 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g30035 No alias HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 228 267
IPR001356 Homeobox_dom 180 226
No external refs found!