Sam_g10338

Description : proline-tRNA ligase & original description: none

Gene families : OG0001971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g10338

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00263390	OVA6, PRORS1,...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	OrthoFinder output from all 47 species
Adi_g011376	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g00963	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07283	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g00681	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene27363.t1	OVA6, PRORS1,...	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s2773.g113075	OVA6, PRORS1	proline-tRNA ligase & original description: CDS=1-792	0.03	OrthoFinder output from all 47 species
Ceric.02G035100.1	OVA6, PRORS1,...	proline-tRNA ligase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001576.15	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Cre09.g406200	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Cre10.g429100	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Dac_g20223	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g01507	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g00716	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g02853	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.1	OrthoFinder output from all 47 species
Ehy_g09074	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os07g07060.1	OVA6, PRORS1,...	proline-tRNA ligase	0.03	OrthoFinder output from all 47 species
Len_g23483	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
MA_10436163g0010	OVA6, PRORS1	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
Mp7g16630.1	OVA6, PRORS1	proline-tRNA ligase	0.03	OrthoFinder output from all 47 species
Msp_g14615	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10174	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g09610	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000100	OVA6, PRORS1	proline-tRNA ligase & original description: CDS=54-1670	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012789	No alias	proline-tRNA ligase & original description: CDS=116-1726	0.03	OrthoFinder output from all 47 species
Solyc01g096870.4.1	OVA6, PRORS1,...	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
Spa_g26532	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g01028	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e032878_P001	OVA6, PRORS1,...	proline-tRNA ligase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004827	proline-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006433	prolyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0015930	glutamate synthase activity	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002314	aa-tRNA-synt_IIb	180	347
IPR016061	Pro-tRNA_ligase_II_C	497	563
IPR004154	Anticodon-bd	368	446

External Links

No external refs found!

Sam_g10338

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation