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Sam_g10508


Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none


Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10508

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00168660 ATVPS54, VPS54,... Vesicle trafficking.target membrane tethering.GARP/EARP... 0.03 OrthoFinder output from all 47 species
AT4G19490 ATVPS54, VPS54 VPS54 0.02 OrthoFinder output from all 47 species
Adi_g063596 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ala_g02680 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Aob_g22183 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Aop_g08788 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ceric.15G033300.1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000692.32 No alias Vacuolar protein sorting-associated protein 54,... 0.02 OrthoFinder output from all 47 species
Cre02.g087551 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g12433 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Dde_g11326 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
GSVIVT01037972001 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.07 OrthoFinder output from all 47 species
Gb_03763 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.04 OrthoFinder output from all 47 species
LOC_Os04g13470.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Lfl_g02410 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Mp5g09490.1 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Msp_g23962 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Nbi_g16046 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Ore_g15136 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Ppi_g03262 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Zm00001e008702_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Zm00001e040599_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR012501 Vps54_C 878 1010
No external refs found!